![]() ![]() The latest versioned release can be downloaded from The most up to date (development) version of BCFtools can be obtained from github as described here. First, we will create a tab-separated file with the regions that we want to extract: We have saved this file as regions.bed. ![]() BCFTOOLS FILTER FOR PRESENCE OF INFO TAG DOWNLOADNote that input, output and log file paths can be chosen freely. A BED file containing regions associated with AMR (Table S5.1) is used to extract variants from the unfiltered VCF file using BCFtools filter 1.9. View the Project on GitHub samtools/bcftools Download This is the official development repository for BCFtools. ", params : uncompressed_bcf = True, filter = "-i 'QUAL > 5'", extra = "", wrapper : "v1.0.0/bio/bcftools/filter" ![]()
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